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Amber |
Molecular Dynamics: Assisted Model Building with Energy Refinement |
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ATLAS |
Automatically Tuned Linear Algebra Software |
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AutoDock |
A suite of automated docking tools |
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AutoDock-Vina |
Open source molecular docking program |
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Basic Linear Algebra Subroutines |
Building block routines for performing basic vector and matrix operations. |
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BioPerl |
Open source bioinformatics toolkit |
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BLACS |
Basic Linear Algebra Communication Subprograms |
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BLASTZ |
A genome alignment tool |
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BoxShade |
BOXSHADE is a program for pretty-printing multiple alignment output. |
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Cern Program Library |
The CERN Program Library is a large collection of general purpose libraries |
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Chaco |
Chaco is a multi-level graph partitioning package |
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Charm |
Charm++ is a parallel object-oriented programming language based on C++. |
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Climate Data Operators |
NetCDF aware Common Data Operators |
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ClustalW |
ClustalW produces biologically meaningful multiple sequence alignments of divergent sequences. |
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Cmake |
Cross platform build system |
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CPMD |
Car-Parrinello Molecular Dynamics w/ MPI & SMP |
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CRI-MAP |
The main purpose of CRI-MAP is to allow rapid, largely automated construction of multilocus linkage maps |
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Emacs |
Emacs is an extensible, customizable text editor |
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Fast Fourier Transforms |
Real and complex discrete Fourier transforms |
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FASTA |
Fasta Sequence Comparison |
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FDPR |
Feedback Directed Program Restructuring |
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Gamess |
The General Atomic and Molecular Electronic Structure System |
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Git |
Git version control system |
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Global Arrays |
The Global Arrays (GA) toolkit provides an efficient and portable "shared-memory" programming interface for distributed-memory computers |
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GNU compiler collection |
C, C++, Fortran, Objective-C, Java and Ada compilers |
