Craig A. Stewart, Ph.D.

Craig A. Stewart, Ph.D.

Executive director, Pervasive Technology Institute 

Office of the Vice President for Information Technology & CIO
Indiana University
2709 E 10th Street
Bloomington IN 47405 USA
812-855-4240
stewart@iu.edu or cas@pobox.com

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Career objectives

My career objective is to enable the Indiana University Pervasive Technology Institute and University Information Technology Services to deliver useful and innovative services—in support of scientific, scholarly, and artistic accomplishment; education; and economic development—to Indiana University, the State of Indiana, and the nation in ways that benefit those constituencies and the world as a whole.

Education

Indiana University
Ph.D. in Ecology and Evolutionary Biology, 1988

Wittenberg University
B.A. in Mathematics and Biology, magna cum laude, 1981

Technical skills

I have particular expertise in bioinformatics, especially computational phylogenetics and bioinformatics applications of high performance computers. I have broad experience in Information Technology, including hands-on responsibility for support, systems administration, administrative applications, and networking. Quality assessment, business process improvement, delivery of online information, and customer service are also areas of expertise. Other technical skill areas include high performance computing architectures, online help systems, statistical and mathematical software, and Unix system administration.

Appointments

  • Current appointments
    2008–Executive Director, Pervasive Technology Institute, Indiana University
    2008–Adjunct Professor, School of Informatics, Indiana University
    2003–Adjunct Associate Professor, Department of Medical and Molecular Genetics, Indiana University School of Medicine
    2003–Adjunct Associate Professor, Department of Biology, Indiana University
  • Past appointments
    2005–2017Associate Dean for Research Technologies, Office of the CIO and Vice President for Information Technology, Indiana University
    2012–2013Expert (EE-401, part time), National Science Foundation, Division of Biological Infrastructure
    2005–2012Information Architect; Co-Director, Center for Computational Cytomics; Indiana METACyt Initiative, Indiana University. Co-led Center for Computatioal Cytomics and organized overall cyberinfrastructure strategy for METACyt.
    April 2007Fulbright Senior Scholar, Technische Universität Dresden, Dresden, Germany
    2005–2008Chief Operating Officer, Pervasive Technology Labs. Led the successful completion of the Lilly Endowment Award to IU in support of the Pervasive Technology Labs and the transformation of the Pervasive Technology Labs to the Pervasive Technology Institute.
    Summer 2003Visiting faculty member and researcher, High Performance Computing Center (HLRS), University of Stuttgart, Stuttgart, Germany. Taught introduction to computational biology in the Computer Science Department (the first ever offering of this topic at the University of Stuttgart). Engaged in research and development in computational biology grid projects with HLRS researchers.
    2003–2005Special Assistant for the Life Sciences, Office of the Vice President for Information Technology/Research, Indiana University
    1999–2005Director, Indiana Genomics Initiative Information Technology Core, Indiana University
    1997–2005Director for Research and Academic Computing (Computation), Indiana University. Responsible for major new grant-funded initiatives in high performance computing, computational biology, and bioinformatics.
    1996–1997Assistant Director for Research Computing Services, University Computing Services (UCS), Indiana University. Responsible for administration of research computing, including high performance computing, virtual reality, mass storage, general research computing, statistical and mathematical computing, Unix workstation support, and humanities computing. Also responsible for Unix and Novell servers delivering administrative computing applications.
    1995–1996Manager, Support Center, UCS, Indiana University. Responsible for front line user support via telephone, e-mail, walk-in, and online help systems. Moved online help system (http://kb.iu.edu/) into . Yahoo! Internet Life Magazine labelled this the best such help system in 1997.
    1991–1995Director, Center for Statistical and Mathematical Computing, UCS, Indiana University. Responsible for delivery and support of statistical and mathematical software on all UCS computing systems. Responsible for deployment of the Stat/Math Center and the Interdisciplinary Consortium for Statistical Applications; improved statistical and mathematical software offerings on UCS systems; aggressively site licensed stat/math software; implemented highly successful software support model.
    1986–1991Manager, Business Computing Facilities, School of Business, Indiana University. Completed networking of Business building; installed new microcomputers for every faculty member (the first School at IU to have a PC for every faculty member); managed maintenance of 400+ microcomputers; installed Novell LAN (4th at IU).
    1985–1986Applications Programmer, Bloomington Academic Computing Services, IU. Responsibilities included online help on CDC, VAX, and Prime systems; staffing help desk phone; advanced consulting on statistical software.
    1984–1985Computer Consultant, Bloomington Academic Computing Services, IU. Responsibilities included general computing and advanced statistical consulting.
    1981–1984Associate Instructor, Department of Biology, Indiana University. Taught entomology and parasitology labs, and assisted in teaching of biostatistics.

Publications, tutorials, and presentations

  • Peer-reviewed publications

    2017

    Fulton, B., S. Gallo, R. Henschel, T.Yearke, K. Börner, R.L. DeLeon, T. Furlani, C.A. Stewart, M. R. Link. XDMoD Value Analytics: A Tool for Measuring the Financial and Intellectual ROI of Your Campus Cyberinfrastructure Facilities. PEARC17: Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact. New Orleans, LA, USA. July 09–13, 2017. doi> 10.1145/3093338.3093358

    Navarro, J.P. C.A. Stewart, R. Knepper, L. Liming, D. Lifka, M. Dahan. 2017. The Community Software Repository from XSEDE: A Resource for the National Research Community. PEARC17: Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact. New Orleans, LA, USA. July 09–13, 2017. doi>10.1145/3093338.3093373

    Chen, L., B. Peng, B. Zhang, T. Liu, Y. Zou, L. Jiang, R. Henschel, C.A. Stewart, Z. Zhang, E. McCallum, T. Zahniser, J. Omer, J. Qiu. 2017. Benchmarking Harp-DAAL: High Performance Hadoop on KNL Clusters. Proceedings of IEEE Cloud 2017 Conference June 25-30 2017, Honolulu, HI, USA. doi> 10.1109/CLOUD.2017.19

    Stewart, C.A., R.D. Knepper, M.R. Link, M. Pierce, E.A. Wernert, N. Wilkins-Diehr. 2017. Cyberinfrastructure, Science Gateways, Campus Bridging, and Cloud Computing. In Encyclopedia of Information Science and Technology, Third Edition. Vol. IX. 2014. Hershey. PA. http://www.igi-global.com. Available from: http://hdl.handle.net/2022/18608

    C.A. Stewart, R. Knepper, M.R. Link, M. Pierce, E.A. Wernert, N. Wilkins-Diehr. 2017. Cyberinfrastructure, Cloud Computing, Science Gateways, Visualization, and Cyberinfrastructure Ease of Use . Pp. 1063-1074 In M. Khosrow-Pour. Encyclopedia of Information Science and Technology, Fourth Edition. IGI Global, Hershey PA, USA. Available from: http://hdl.handle.net/2022/21589

    2016

    Coulter, E., J. Fischer, B. Hallock, R. Knepper, D. Lifka, J.P. Navarro, M. Pierce, C.A. Stewart. 2016. Cyberinfrastructure as a platform to facilitate effective collaboration between institutions and support collaboratories. In the SIGUCCS’16:Proceedings of the 2016 ACM on SIGUCCS Annual Conference. Proceedings of SIGUCCS '16, USA. doi=http://dx.doi.org/10.1145/2974927.2974962

    Grimshaw, A., M.A. Prodhan, C.A. Stewart, R. Knepper. (2016). Campus Compute Co-operative (CCC): A Service Oriented Cloud Federation. In the proceedings of the IEEE 12th International Conference on eScience. Baltimore, MD October 24-26

    Stewart, C.A., Hancock, D.Y., Vaughn, M., Fischer, J., Cockerill, T., Liming, L., Merchant, N., Miller, T., Lowe, J.M., Stanzione, D.C., Taylor, J., Skidmore, E. (2016). Jetstream – performance, early experiences, and early results. Proceedings of the 2016 XSEDE Conference: Diversity, Big Data & Science at Scale, doi: 10.1145/2949550.2949639.Winner: 2016 Phil Andrews Memorial Best Technical Paper Award

    Thota, A., Fulton, B., Weakley L. M., Henschel, R., Hancock, D.Y., Allen, M., Tillotson, J., Link, M., & Stewart, C. A. (2016). A PetaFLOPS Supercomputer as a Campus Resource: Innovation, Impact, and Models for Locally-Owned High Performance Computing at Research Colleges and Universities. Proceedings of SIGUCCS '16. November 06-09, 2016, Denver, CO, USA. DOI: http://dx.doi.org/10.1145/2974927.2974956

    2015

    Stewart, C.A., Roskies, R., Knepper, R., Moore, R.L., Whitt, J., & Cockerill, T.M. (2015) XSEDE Value Added, Cost Avoidance, and Return on Investment. Proceedings of the 2015 XSEDE Conference: Scientific Advancement Enabled by Enhanced Cyberinfrastructure, doi: http://dx.doi.org/10.1145.2792745.2792768 . Winner: 2015 Phil Andrews Best Technical Paper Award

    Stewart, C.A., Cockerill, T.M., Foster, I., Hancock, D.Y., Merchant, N., Skidmore, E., Stanzione, D.C., Taylor, J., Tuecke, S., Turner, G., Vaughn, M., & Gaffney, N.I. (2015). Jetstream: a self-provisioned, scalable science and engineering cloud environment. Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, doi: http://dx.doi.org/10.1145.2792745.2792768 .

    Fischer, J., Tuecke, S., Foster, I., Stewart, C.A. (2015). Jetstream: A Distributed Cloud Infrastructure for Under Resourced Higher Education Communities. SCREAM '15 Proceedings of the 1st Workshop on The Science of Cyberinfrastructure: Research, Experience, Applications and Models, doi:10.1145/2753524.2753530

    2014

    Stewart, C.A., Knepper, R. D., Link, M. R., Pierce, M., Wernert, E. A., Wilkins-Diehr, N. Cyberinfrastructure, Science Gateways, Campus Bridging, and Cloud Computing. In Encyclopedia of Information Science and Technology, Third Edition. Vol. IX. 2014. Hershey. PA. http://www.igi-global.com. Available at http://hdl.handle.net/2022/18608

    Fischer, J., Knepper, R., Standish, M., Stewart, C.A., Alvord, R., Lifka, D., Hallock, B., Hazlewood, V. 2014. “Methods for Creating XSEDE Compatible Clusters.” XSEDE '14 Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment. Article No. 77. July 13-18, 2014, Atlanta, GA. http://dx.doi.org/10.1145/2616498.2616578 . Also available at: http://hdl.handle.net/2022/19209

    Hallock, B., R. Knepper, J. Ferguson, C.A. Stewart. XSEDE Campus Bridging Pilot Case Study. XSEDE '14 Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment. Article No. 77. July 13-18, 2014, Atlanta, GA.

    Hallock, B., R. Knepper, J. Ferguson, C.A. Stewart. Leveraging Your Local Resources and National Cyberinfrastructure Resources without Tears. SIGUCCS '14 Proceedings of the 42nd annual ACM SIGUCCS conference on User services. Pages 107-110

    2013

    Kluge, M., S. Simms, T. William, R. Henschel, A. Georgi, C. Meyer, M.S. Mueller, C.A. Stewart, W. Wünsch and W.E. Nagel. "Performance and quality of service of data and video movement over a 100 Gbps testbed". Future Generation Computer Systems, 29(1), 230-240. 2013. http://dx.doi.org/10.1016/j.future.2012.05.028

    2012

    Henschel, R., S. Simms, D. Hancock, S. Michael, T. Johnson, N. Heald, T. William, D. Berry, M. Allen, R. Knepper, M. Davy, M.R. Link and C.A. Stewart. Demonstrating Lustre over a 100Gbps Wide Area Network of 3500km. In: Proceedings of SC'12: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. (Salt Lake City, UT, 2012). ISBN: 978-1-4673-0804-5. http://dl.acm.org/citation.cfm?id=2388996.2389005

    Kallback-Rose, K., K. Seiffert, D. Antolovic, T. Miller, R. Ping and C. Stewart. Conducting K-12 outreach to evoke early interest in IT, science, and advanced technology. In: Proceedings of 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond. (Chicago, Illinois, 2012). ACM. http://doi.acm.org/10.1145/2335755.2335853 Preprint: http://hdl.handle.net/2022/14807

    Stewart, C.A., F. Bachmann, V. Hazlewood, R. Knepper, I. Foster, J.W. Ferguson, A. Grimshaw, D. Lifka. 2012. What is campus bridging and what is XSEDE doing about it? In: Proceedings of 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond. (Chicago, Illinois, 2012). ACM. http://dx.doi.org/10.1145/2335755.2335844

    2010

    Arenson, A.D., L.N. Bakhireva, C.D. Chambers, C.A. Deximo, T. Foroud, J.L. Jacobson, S.W. Jacobson, K.L. Jones, S.N. Mattson, P.A. May, E.S. Moore, K. Ogle, E.P. Riley, L.K. Robinson, J. Rogers, A.P. Streissguth, M.C. Tavares, J. Urbanski, Y. Yezerets, R. Surya, C.A. Stewart and W.K. Barnett. "Implementation of a shared data repository and common data dictionary for fetal alcohol spectrum disorders research". Alcohol, 44(7-8), 643-647. 2010. http://dx.doi.org/10.1016/j.alcohol.2009.08.007 or http://hdl.handle.net/2022/7194

    Stewart, C.A., S. Simms, B. Plale, M. Link, D. Hancock and G. Fox. What is Cyberinfrastructure? In: Proceedings of SIGUCCS 2010. (Norfolk, VA, 24-27 Oct, 2010). http://portal.acm.org/citation.cfm?doid=1878335.1878347

    Stewart, C.A., M. Link, D.S. McCaulay, G. Rodgers, G. Turner, D. Hancock, P. Wang, F. Saied, M. Pierce, R. Aiken, M. Mueller, M. Jurenz, M. Lieber, J. Tillotson and B. Plale. "Implementation, performance, and science results from a 30.7 TFLOPS IBM BladeCenter cluster". Concurrency and Computation: Practice and Experience, 22(2), 157-174. 2010. http://dx.doi.org/10.1002/cpe.153

    2009

    Li, H., D. Hart, M. Mueller, U. Markwardt and C.A. Stewart. GeneIndex: An Open Source Parallel Program for Enumerating and Locating Words in a Genome. In: Proceedings of IJCBS '09. International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing (3-5 Aug. 2009). http://dx.doi.org/10.1109/IJCBS.2009.127

    Lowe, J.M., C. Shields, D. Hancock, M. Link, C.A. Stewart and M. Pierce. Gateway Hosting at Indiana University. In: Proceedings of the TeraGrid 2009 Conference. (Arlington, VA, 2009). http://hdl.handle.net/2022/13944

    2008

    Simms, S.C., C.A. Stewart and S.D. McCaulay. Cyberinfrastructure resources for U.S. Scholarship: the TeraGrid. In: Proceedings of the 36th annual ACM SIGUCCS conference on User services. (Portland, OR, USA, 2008). ACM. http://portal.acm.org/citation.cfm?id=1450057

    Catlett, C., W.E. Allcock, P. Andrews, R. Aydt, R. Bair, N. Balac, B. Banister, T. Barker, M. Bartelt, P. Beckman, F. Berman, G. GBertoline, A. Blatecky, J. Boisseau, J. Bottum, S. Brunett, J. Bunn, M. Butler, D. Carver, J. Cobb, T. Cockerill, P.F. Couvares, M. Dahan, D. Diehl, T. Dunning, I. Foster, K. Gaither, D. Gannon, S. Goasguen, M. BGrobe, D. Hart, M. Heinzel, C. Hempel, W. Huntoon, J. Insley, C. Jordan, I. Judson, A. Kamrath, N. Karonis, C. Kesselman, P. Kovatch, L. Lane, S.L. Lathrop, M., D. Lifka, L. Liming, M. Livny, R. Loft, D. Marcusiu, J. Marsteller, S. Martin, D.S. McCaulay, J. McGee, L. McGinnis, M.A. McRobbie, P. Messina, R. Moore, J.P. MNavarro, J. Nichols, M.e. Papka, R. Pennington, G. Pike, J. Pool, R. Reddy, D. Reed, T. TRimovsky, E. Roberts, R. Roskies, S. Sanielevici, J.R. Scott, A. Shankar, M. Sheddon, M. Showerman, D. Simmel, A. Singer, D. Skow, S. Smallen, W.S. Smith, C., R. Stevens, C.A. Stewart, R.B. Stock, N. Stone, J. Towns, T. Urban, M. Vildibill, E. Walker, V. Welch, N. Wilkins-Diehr, R. Williams, L. Winkler, L. Zhao and A. Zimmerman. TeraGrid: Analysis of Organization, System Architecture, and Middleware Enabling New Types of Applications. In: Advances in Parallel Computing Volume 16, 2008: High Performance Computing and Grids in Action. L. Grandinetti, ed. IOS Press, Amsterdam, 2008. http://hdl.handle.net/2022/14524

    2007

    Stewart, C.A., M. Mueller, M. Lingwall. 2007. Progress Towards Petascale Applications in Biology: Status in 2006. In: W. Lehner, N. Meyer, A. Streit, C.A. Stewart (eds.). Euro-Par 2006 Parallel Processing: Workshops: In: CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Dresden, Germany (Lecture Notes in Computer Science). Springer-Verlag Berlin Heidelberg. http://hdl.handle.net/2022/1829

    Arenson A.D., L. Bakhireva, T. Chambers, C. Deximo, T. Foroud, J. Jacobson, S. Jacobson, K.L. Jones, S. Mattson, P. May, E. Moore, K. Ogle, E. Riley, L. Robinson, J. Rogers, A. Streissguth, M. Tavares, J. Urbanski, H. Yezerets, C.A. Stewart. 2007. Implementation of a distributed architecture for managing collection and dissemination of data for fetal alcohol spectrum disorders research. In: W. Dubitzky (eds): GCCB 2006, LNBI 4360. Springer-Verlag Berlin Heidelberg. pp. 33-46. http://hdl.handle.net/2022/1025

    2005

    Myron, S.A., M.R. Link, R. Knepper, C.A. Stewart. 2005. PubsOnline: an open source database for managing and delivering bibliographic information. Proceedings of the 33rd annual ACM SIGUCCS conference on User services. 6-9 November 2005, Monterey, CA, USA. http://portal.acm.org/citation.cfm?id=1099492

    Wernert, E.A., M. Boyles, J.N. Huffman, J. Rogers, J.C. Huffman, C.A. Stewart: The john-e-box: fostering innovation, inclusion, and collaboration through accessible advanced visualization. Proceedings of Richard Tapia Celebration of Diversity in Computing Conference 2005: 64-67. http://portal.acm.org/citation.cfm?doid=1095269

    2004

    Stewart, C.A. 2004. Bioinformatics: transforming biomedical research and medical care. Communications of the ACM 47(11): 31-33. http://portal.acm.org/citation.cfm?doid=1029496.1029522

    Wang, P., G. Turner, S. Simms, D. Hart, M. Papakhian and C.A. Stewart. One Teraflop Achieved with a Geographically Distributed Linux Cluster. In: High-Performance Computing. L.T. Yang and M. Guo, eds., 2006. http://dx.doi.org/10.1002/0471732710.ch26

    Stewart, C.A. R. Keller, R. Repasky, M. Hess, D. Hart, M. Mueller, R. Sheppard, U. Woessner, M. Aumueller, Huian Li, D.K. Berry, J. Colbourne. 2004. A global grid for analysis of arthropod evolution. pp. 328-337 In: R. Buyya (ed.) Proceedings: Fifth IEEE/ACM International Workshop on grid computing. 8 November 2004, Pittsburgh, PA. http://portal.acm.org/citation.cfm?id=1033261

    Stewart, C.A., D. Hart, R.W. Sheppard, H. Li, R. Cruise, V. Moskvin, L. Papiez. 2004. Parallel computing in biomedical research and the search for peta-scale biomedical applications. pp. 719-716 In: G.R. Joubert, W.E. Nagel, F.J. Peters, and W.V. Walter (eds). Parallel computing: software technology, algorithms, architectures & applications. Advances in Parallel Computing Vol. 13. Elsevier, Oxford. doi:10.1016/S0927-5452(04)80088-1

    2003

    Stewart, C.A., D. Hart, R. Repasky, M. Papakhian, A. Shankar, E. Wernert, A.D. Arenson, G. Bernbom. 2003. Advanced Information Technology Support for Life Sciences Research. Proceedings of SIGUCCS 2003 Conference, 21-24 September, San Antonio, TX. http://portal.acm.org/citation.cfm?id=947472

    2002

    Samuel. J.V., Peebles, C.S., Noguchi, T., Stewart, C.A. 2002. Gauging IT Support Strategies: User needs then and now. Proceedings of SIGUCCS 2002 Conference, November 20-23, Providence, RI, pp. 284-285. http://portal.acm.org/citation.cfm?id=588646.588723

    Samuel. J.V., Wilhite, K.J., Stewart, C.A. 2002. Getting More for Less: A Software Distribution Model. Paper presented at the EDUCAUSE Conference, October 1-4, Atlanta, GA. http://educause.edu/ir/library/pdf/EDU0246a.pdf

    2001

    Peebles, C.S., C.A. Stewart, B.D. Voss, S.B. Workman. 2001. Measuring quality, cost, and value of IT services in higher education. Proceedings of the American Quality Congress, Charlotte, NC, May 2001. http://hdl.handle.net/2022/426

    Peebles, C.S., C.A. Stewart, B.D. Voss, S.B. Workman. 2001. Measuring quality, cost, and value of IT services in higher education. Proceedings of EDUCAUSE, Indianapolis, IN, October 2001. http://hdl.handle.net/2022/425

    Stewart, C.A., D. Hart, D. K. Berry, G. J. Olsen, E. Wernert, W. Fischer. 2001. Parallel implementation and performance of fastDNAml–a program for maximum likelihood phylogenetic inference. Proceedings of SC2001, Denver, CO, November 2001. http://portal.acm.org/citation.cfm?id=582054

    Stewart, C.A., C.S. Peebles, M. Papakhian, J. Samuel, D. Hart, S. Simms. 2001. High Performance Computing: Delivering Valuable and Valued Services at Colleges and Universities. Proceedings of SIGUCCS, Portland, OR, October 2001. http://portal.acm.org/citation.cfm?id=500956.501026

    1999

    Stewart, C.A., T.W. Tan, M. Buckhorn, D. Hart, D.K. Berry, L. Zhang, E. Wernert, M. Sakharkar, W. Fischer and D.F. McMullen. Evolutionary biology and computational grids. Paper presented at: CASCON Workshop on Computational Biology (Mississauga, Ontario, Canada, 10 Nov, 1999). http://hdl.handle.net/2022/14008

    1998

    Stewart, C.A., D. Grover, R.D. Vernon. 1998. Changing (almost) everything and keeping (almost) everyone happy. CAUSE/Effect 21(3):39-46. http://net.educause.edu/ir/library/html/cem/cem98/cem9837.html

    1993

    Stewart, C.A., and P.A. McClure. 1993. Diurnal variation in thermal and metabolic parameters of the golden hamster (Mesocricetus auratus). J. Comp. Physiol. B 63: 234-238. http://dx.doi.org/10.1007/BF00261670

    1991

    Stewart, C.A. 1991. A note on the microdistribution of the Red-Backed Vole, Clethrionomys gapperi, in the E.N. Huyck Preserve, New York. Can. Field-Naturalist 105:274-275. http://hdl.handle.net/2022/14019

    1990

    Stewart, C.A., J. Owens, and P.A. McClure. 1990. Air flow and convective heat loss from small mammals in laboratory metabolism chambers. J. Thermal Biol. 15:313-316. doi:10.1016/0306-4565(90)90018-D

    1989

    Stewart, C.A. and P.A. McClure. Diurnal variation in minimal thermal conductance of three rodents: The white-footed mouse (peromyscus leucopus), the golden hamster (mesocricetus auratus), and the eastern woodrat (neotoma floridana). J.B. Mercer, ed. Thermal physiology. Elsevier Science Publishers B.V. (Biomedical Division). 1989. http://hdl.handle.net/2022/15226

    1988

    Stewart, C.A. 1988. Diurnal variation in minimal thermal conductance of the white-footed mouse (Peromyscus leucopus), the golden hamster (Mesocricetus auratus), and the eastern woodrat ( Neotoma floridana). Ph.D. dissertation, Indiana University. http://hdl.handle.net/2022/13327

    Stewart, C.A. 1988. Diet of the rainbow darter ( Etheostoma caeruleum) in Rock Run, Clark County, Ohio. Ohio. J. Science 88: 198-200. http://hdl.handle.net/2022/13261

  • Workshop and technical reports (not peer reviewed)

    2017

    Stewart, C.A. D.Y. Hancock, M. Vaughn, N. Merchant, J.M. Lowe, J. Fischer, L. Liming, J. Taylor, G. Turner, C.B. Hammond, E. Skidmore, M. Packard, T. Miller, I. Foster, P. Rad, S. Mehringer. 2017. Jetstream Stakeholder Advisory Board Meeting February 2017: Presenters’ Report. (PTI Technical Report PTI-TR17-001) Bloomington, IN: Indiana University. Retrieved from http://hdl.handle.net/2022/21247

    2016

    Stewart, C.A., Plale, B., Welch, V., Fox, G.C., Link, M., Miller, T., Wernert, E.A., Boyles M.J., Fulton, B., Hancock, D.Y., Henschel, R., Link, M.R., Michael, S.A., Pierce, M., Ping, R.J., Gniady, T., Mikski, G., & Snapp-Childs, W. 2016. Pervasive Technology Institute annual report: Research innovations and advanced cyberinfrastructure services in support of IU strategic goals during FY 2016 (PTI-TR16-007). Retrieved from http://hdl.handle.net/2022/21162

    2015

    Hallock, B.; R. Knepper; C.A. Stewart. 2015. Workshop Report: Campus Bridging: Reducing Obstacles on the Path to Big Answers. http://hdl.handle.net/2022/20538 .

    Stewart, C.A., Plale, B., Welch, V., Link, M., Miller, T., Wernert, E.A., Boyles M.J., Fulton, B., Hancock, D.Y., Henschel, R., Link, M.R., Michael, S.A., Pierce, M., Ping, R.J., Gniady, T. “Indiana University’s advanced cyberinfrastructure in service of IU strategic goals: Activities of PTI during FY2015“ Indiana University, Bloomington, IN. PTI Technical Report PTI-TR15-008, Dec 2015. http://hdl.handle.net/2022/20566

    Hancock, D.Y., M.R. Link, C.A. Stewart, G.W. Turner. 2015. Acceptance Test for Jetstream Test Cluster — Jetstream-Arizona (JA) Dell PowerEdge Test and Development Cluster. PTI Technical Report PTI-TR15-007. Indiana University, Bloomington IN. 2015. http://hdl.handle.net/2022/20355

    Link, M.R., Hancock, D.Y., Simms, S.C., Henschel, R., Michael, S.A., Fulton, B., Stewart, C.A. "Use of IU parallel computing resources and high performance file systems - July 2013 to Dec 2014." Indiana University, Bloomington, IN. PTI Technical Report PTI-TR15-001, Feb 2015. http://hdl.handle.net/2022/19278

    Stewart, C.A., Link, M.R., Wernert, E.A., Barnett, W.K., Miller, T., Hancock, D.Y., Henschel, R., Michael, S.A., Pierce, M., Boyles, M.J., Fulton, B., Ping, R.J. 2015. “Indiana University Pervasive Technology Institute cyberinfrastructure in service of IU strategic goals: Activities Research Technologies Division of UITS and National Center for Genome Analysis Support in FY2014.” Indiana University, Bloomington, IN. PTI Technical Report PTI-TR15-002, Jan 2015. http://hdl.handle.net/2022/19279

    Stewart, C. A., T. Miller. 2015. IU PTI/UITS Research Technologies Annual Report: FY 2014 (short version). http://hdl.handle.net/2022/20483 Stewart, C.A.; T. Miller; P. Blood; J. Tillotson; W. Froelich; L. DeStefano; L. Rivera. Lorna. 2014. XSEDE 12 Conference Final Report http://hdl.handle.net/2022/18493

    2014

    Barnett, W.K., Doak, T.G., and Stewart, C.A. 2014. “National Center for Genome Analysis Program Year 3 Report – September 15, 2013 – September 14, 2014” Indiana University, Bloomington, IN. PTI Technical Report PTI-TR14-005. Available at http://hdl.handle.net/2022/18513

    Barnett. W. K., LeDuc, R. D., Stewart, C. A. National Center for Genome Analysis Program Year 2 Report – September 15, 2012 – September 14, 2013. 2014. Indiana University. http://hdl.handle.net/2022/17387

    Ping, R. J., Miller, T., Plale, B., Stewart, C. A. 2014. 2013 annual report on training, education, and outreach activities of the Indiana University Pervasive Technology Institute and affiliated organizations. Indiana University. http://hdl.handle.net/2022/17581

    2013

    Barnett, W.K., C. Ganote, M. Vaughn, R.D. LeDuc, C.A. Stewart. 2013. National Center for Genome Analysis Program Year 1 Report – September 15, 2011 – September 14, 2012 . Indiana University, Bloomington, IN. https://scholarworks.iu.edu/dspace/handle/2022/15340 .

    Barnett, W.K., G. Shankar, D.Y. Hancock, M. Allen, K. Seiffert, M. Boyles, J.L. Rogers, E. Wernert, M.R. Link, C.A. Stewart. 2013. 2012 Annual Report - Advanced Biomedical Information Technology Core . https://scholarworks.iu.edu/dspace/handle/2022/15229 .

    Floyd, Mike J.; Seiffert, Kurt; Stewart, Craig A..; Turner, George; Cromwell, Dennis; Hancock, Dave; Kallback-Rose, Kristy; Link, Matthew R.; Simms, Steve; Williams, Troy. 2013. Storage Briefing: Trends and IU. https://scholarworks.iu.edu/dspace/handle/2022/18626

    Ping R., T. Miller, E.A. Wernert, and C.A. Stewart. 2013. IEEE Cluster 2013 Conference final report. Available from: http://hdl.handle.net/2022/17580

    Lifka, D., I. Foster, S. Mehringer, M. Parashar, P. Redfern, C. A. Stewart, S. Tuecke.2013. XSEDE Cloud Survey Report.http://hdl.handle.net/2142/45766

    Link, M.R., D.Y. Hancock, K. Seiffert, S. Simms, S. Michael, C.A. Stewart. 2013. Usage of Indiana University computation and data cyberinfrastructure in FY 2011/2012 and assessment of future needs . Indiana University, Bloomington, IN. http://hdl.handle.net/2022/16604 .

    Dreher, P., C.A. Stewart, J.M. Pepin, G.T. Almes, M. Mundrane, S.C. Ahalt, Stanley C. 2013. Final report on accomplishments of a Task Force on Campus Bridging sponsored workshop: Campus Leadership Engagement in Building a Coherent Campus Cyberinfrastructure . Indiana University, Bloomington, IN. https://scholarworks.iu.edu/dspace/handle/2022/15467

    Stewart, C. A., Barnett, W. K., Link, M. R., Shankar, G., Miller, T., Michael, S., Henschel, R., Boyles, M. J., Wernert, E., Quick, R. 2013. Services and support for IU School of Medicine and Clinical Affairs Schools by the UITS/PTI Advanced Biomedical Information Technology Core and Research Technologies Division in FY 2013 - Extended Version. http://hdl.handle.net/2022/17216

    2012

    Stewart, C.A., T. Miller, D.Y. Hancock, S. Marru, M. Pierce, M.R. Link, S.C. Simms, K. Seiffert, J. Wernert and J. Bolte. 2012. Indiana University Pervasive Technology Institute – Research Technologies: XSEDE Service Provider and XSEDE subcontract report (PY1: 1 July 2011 to 30 June 2012) . Indiana University, Bloomington, IN. http://hdl.handle.net/2022/14702

    Stewart, C.A., M.R. Link, E. Wernert, W.K. Barnett and T. Miller. 2012. Information technology in support of research, scholarship, and creative activities: A strategic plan for Research Technologies – a division of UITS and a PTI Service & Cyberinfrastructure Center (Revision 1.1) . (PTI-TR12-007-01), Indiana University, Bloomington, IN. http://hdl.handle.net/2022/14596

    Miller, T., B. Plale and C.A. Stewart. Annual report on training, education, and outreach activities of the Indiana University Pervasive Technology Institute and affiliated organizations . 2012. http://hdl.handle.net/2022/14132

    Henschel, R., S.C. Simms, D. Hancock, S. Michael, T. Johnson, N. Heald, T. William, D.K. Berry, M. Allen, R. Knepper, M. Davy, M.R. Link and C.A. Stewart. Technical Report: Report on Lustre use across an experimental 100Gb network spanning 2,175 mi. Indiana University. 2012. http://hdl.handle.net/2022/14137

    Stewart, C.A.; Link, M.R.; Henschel, R.; Hancock, D.Y.; Li, H. 2012. Technical Report: Benchmarking an HP DL580 cluster at Indiana University (Mason). http://hdl.handle.net/2022/14078

    Stewart, C.A., M.R. Link, D.S. McCaulay, R. Henschel, D. Hancock. “Technical Report: Acceptance Test for FutureGrid Cray XT5m at Indiana University (Xray),” Indiana University, Bloomington, IN. PTI Technical Report PTI-TR12-005, Mar 2012. http://hdl.handle.net/2022/14267

    Stewart, C. A., Miller, T., Blood, P., Tillotson, J., Froelich, W., DeStefano, L., Rivera, L. 2012. XSEDE 12 Conference Final Report. Indiana University. http://hdl.handle.net/2022/18493

    2011

    Stewart, C.A. and T. Miller. 2011. Economic development by the Indiana University Pervasive Technology Institute, Pervasive Technology Labs, and the Research Technologies Division of University Information Technology Services September 1999 – June 2011: a public report . Indiana University, Bloomington, IN. 2011. http://hdl.handle.net/2022/13559

    Almes, G.T.; Jent, D.; Stewart, C.A. 2011. Campus Bridging: Data and Networking Issues Workshop Report. http://hdl.handle.net/2022/13200. Available as print-on-demand book from: https://www.createspace.com/3592681

    Barnett, W., V. Welch, A. Walsh and C.A. Stewart. A Roadmap for Using NSF Cyberinfrastructure with InCommon. 2011. http://hdl.handle.net/2022/13024 or http://www.incommon.org/nsfroadmap.html. Available as print-on-demand book from https://www.createspace.com/3630011

    Barnett, W., V. Welch, A. Walsh and C.A. Stewart. A Roadmap for Using NSF Cyberinfrastructure with InCommon: Abbreviated Version. 2011. http://hdl.handle.net/2022/13025 or http://www.incommon.org/nsfroadmap.html

    Dreher, P., S.C. Ahalt, G. Almes, M. Mundrane, J. Pepin and C.A. Stewart, (eds.), 2011. Campus Bridging: Campus Leadership Engagement in Building a Coherent Campus Cyberinfrastructure Workshop Report. 2011. http://hdl.handle.net/2022/13194

    NSF Advisory Committee for Cyberinfrastructure Task Force on Campus Bridging. Final Report. 2011. http://www.nsf.gov/od/oci/taskforces/TaskForceReport_CampusBridging.pdf. Available as print-on-demand book from: https://www.createspace.com/3597300
    [Stewart chaired this task force and led writing of this report]

    Stewart, C.A., D.S. Katz, D.L. Hart, D. Lantrip, D.S. McCaulay and R.L. Moore. Technical Report: Survey of cyberinfrastructure needs and interests of NSF-funded principal investigators. 2011. http://hdl.handle.net/2022/9917

    Stewart, C.A., D.S. McCaulay, S. Jul and R.L. Moore. Technical Report: TeraGrid eXtreme Digital Campus Bridging Requirements Elicitation Meeting. 2011. http://hdl.handle.net/2022/13026

    Henschel, R.; Stewart, C.A.; Link, M.R.; McCaulay, D. S.; Hancock, D.Y. 2011. Technical Report: Acceptance Test for FutureGrid IBM iDataPlex at Indiana University (India). http://hdl.handle.net/2022/13429

    2010

    Stewart, C.A., G.T. Almes, D.S. McCaulay and B.C. Wheeler, eds., 2010. Cyberinfrastructure Software Sustainability and Reusability Workshop Final Report. https://scholarworks.iu.edu/dspace/handle/2022/6701. Also available as print on demand hardcopy from https://www.createspace.com/3506064

    Stewart, C.A. Progress Report on Implementation of Recommendations from the Indiana University Cyberinfrastructure Research Taskforce. 2010. http://hdl.handle.net/2022/8974

    2009

    Dreher, P., V. Agarwala, S. Ahalt, G. Almes, S. Fratkin, T. Hauser, J. Odegard, J. Pepin, and C.A. Stewart. Developing a Coherent Cyberinfrastructure from Local Campuses to National Facilities: Challenges and Strategies. 2009. http://hdl.handle.net/2022/5122

    Stewart, C.A.; Link, M.R. ; McCaulay, D. SS.; Rodgers, G.; Turner, G.; Hancock, D.Y.; Wang, P.; Saied, F.; Pierce, M.; Aiken, R.; Mueller, M.S.; Jurenz, M.; Lieber, M.; Tillotson, J.; Plale, B.A. 2009. Application benchmark results for Big Red, an IBM e1350 BladeCenter Cluster. http://hdl.handle.net/2022/5125

    Stewart, C.A., S.C. Simms, C. Pilachowski and R. Bramley. 2009. Acquisition of a High-Speed, High Capacity Storage System to Support Scientific Computing: The Data Capacitor Final Report. Indiana University, Bloomington, IN. http://hdl.handle.net/2022/14525

    2007

    Simms, S.C., M.P. Davy, C.B. Hammond, M.R. Link, C.A. Stewart, S. Teige, M.-H. Baik, Y. Mantri, R. Lord , D.F. McMullen, J.C. Huffman, K. Huffman, G. Juckeland, M. Kluge, R. Henschel, H. Brunst, A. Knuepfer, M. Mueller, P.R. Mukund, A. Elble, A. Pasupuleti, R. Bohn, S. Das, J. Stefano, G.G. Pike, D.A. Balog. 2007. Indiana University’s SC|07 Bandwidth Challenge award-winning project: Using the Data Capacitor for Remote Data Collection, Analysis, and Visualization. Indiana University, Bloomington, IN. http://hdl.handle.net/2022/14615

    Indiana University Research Data Management Taskforce. 2007. Report of the Indiana University Research Data Management Taskforce. http://hdl.handle.net/2022/3294

    McRobbie, M.A., K. Adams, M.P. Baker, G. Fox, D. Gannon, R. Heiland, A. Lumsdaine, D.F. McMullen, T. Miller, D. Siefert-Herron, C.A. Stewart, S. Wallace, M. Pierce and G. Travis. 2007. Pervasive Technology Labs Program Report, July 2007. http://hdl.handle.net/2022/3210

    2006

    McRobbie, M.A., M.P. Baker, G. Fox, D. Gannon, R. Heiland, A. Lumsdaine, D.F. McMullen, T. Miller, D. Siefert-Herron, C. Stewart, and S. Wallace. Pervasive Technology Labs Program Report, July 2006. 2006. http://hdl.handle.net/2022/456

    McRobbie, M.A, G. Fox, D. Gannon, M.J. Palakal, and C.A. Stewart. Extensible Terascale Facility (ETF): Indiana-Purdue Grid (IP-Grid). Indiana University, Bloomington, IN, 2006. http://hdl.handle.net/2022/472

    2005

    McRobbie, M.A., K. Adams, M.P. Baker, G. Fox, D. Gannon, R. Heiland, A. Lumsdaine, D.F. McMullen, C.A. Stewart, and S. Wallace. 2005. Pervasive Technology Labs Program Report, August 2005. 2005. http://hdl.handle.net/2022/455

    2004

    Stewart, C.A. IU-IBM Protein Family Annotator Project Final Report. 2004. http://hdl.handle.net/2022/1830

    2003

    McRobbie, M.A., R. Bramley, J.C. Huffman and C.A. Stewart. 2003. Creation of the AVIDD Data Facility: A Distributed Facility for Managing, Analyzing and Visualizing Instrument-Driven Data (AVIDD). Indiana University, Bloomington, IN. http://hdl.handle.net/2022/477

    Stewart, C.A. IU-IBM DiscoveryLink Project Final Report. 2003. http://hdl.handle.net/2022/1831

    Stewart, C.A., M. Papakhian, D. Hart, A. Shankar, A.D. Arenson, D.F. McMullen, M. Palakal, M. Dalkilic and P. Ortoleva. 2003. 2003 Report on Indiana University Accomplishments supported by Shared University Research Grants from IBM, Inc. http://hdl.handle.net/2022/2186

    Cruise, R., D. Hart, M. Papakhian, R. Repasky, J. Samuel, A. Shankar, C.A. Stewart and E. Wernert. 2003. University Information Technology Services' Advanced IT Facilities: The least every researcher needs to know. M. Lingwall, ed., Indiana University, Bloomington, IN. http://hdl.handle.net/2022/14766

    2002

    Cruise, R., D. Hart, M. Papakhian, R. Repasky, J. Samuel, A. Shankar, C.A. Stewart and E. Wernert. 2002. INGEN's advanced IT facilities: The least you need to know. M. Lingwall, ed., Indiana University, Bloomington, IN. http://hdl.handle.net/2022/15221

    2000

    Stewart, C.A., R. Bramley, G. Bernbom, J.W. Dunn, Z. Meglicki, D.F. McMullen, D. Hart and M. Papakhian. 2000. Indiana University Shared University Research grants - Report on Accomplishments. http://hdl.handle.net/2022/2185

  • Position papers and congressional testimony

    Stewart, C.A. 2017. Addressing the national need for more diversity and aggregate investment in cyberinfrastructure supporting open science and engineering research. Indiana University, Bloomington, IN. PTI Technical Report PTI-TR17-002. Retrieved from http://hdl.handle.net/2022/21612

    Indiana University; Stewart, Craig A.; Barnett, William K.; Shekar, Anantha; Sheehan, Vincent; Wasitis, Douglas A.; Wheeler, Bradley C. 2014. Indiana University’s Response to House Energy and Commerce Committee Request for Suggestions: 21st Century Cures: Leveraging Technology to Accelerate the #Path2Cures. http://hdl.handle.net/2022/18510

    Coalition for Academic Scientific Computation. The future of the TeraGrid and the national advanced cyberinfrastructure: a perspective from the Coalition for Academic Scientific Computation. 2008. http://hdl.handle.net/2022/3082

    Stewart, Craig A. Testimony before the United States House of Representatives Committee on Science and Technology Hearing on Leadership Under Challenge: Information Technology R&D in a Competitive World (2007 report of the President’s Council of Advisors on Science and Technology). 2008. http://hdl.handle.net/2022/5124

    Coalition for Academic Scientific Computation. Opportunities for Biomedical Research and the NIH through High Performance Computing and Data Management. 2003. http://hdl.handle.net/2022/5123

  • Other publications (not peer reviewed)

    Stewart. C.A. State of the Coalition for Academic Scientific Computing (CASC) – 2008. 2008. http://www.hpcwire.com/offthewire/State-of-the-Coalition-for-Academic-Scientific-Computing-CASC--2008-37099739.html

    Indiana University Life Sciences Strategic Plan Drafting Committee (McRobbie, M.A., K.R. Subbaswamy, D.C. Brater, and C.A. Stewart). 2006. Indiana University Life Sciences Strategic Plan. http://hdl.handle.net/103333/391

    Lingwall, M., and C.A. Stewart. 2007. The Promise of Petascale Computing. http://www.bio-itworld.com/BioIT_Article.aspx?id=51184

    Stewart, C.A. and G. Bertoline. I-Light: A Network for Collaboration Between Indiana University and Purdue University. In: Proceedings of the 2005 I-Light Conference. (Bloomington, IN, 2005). E.A. Wernert, G.R. Bertoline and G.S. Moore, eds. http://hdl.handle.net/2022/435

    Peebles, C.S., C.A. Stewart, G. Bernbom, D.F. McMullen, A. Shankar, J.V. Samuel, J. Daniels, M. Papakhian, D. Hart, J. Walsh and E. Wernert. Research and Academic Computing Implementation Plan. Indiana University. 2000. http://hdl.handle.net/2022/15223

    Stewart, C.A. 1992. Statistical and mathematical computing at IU: A look back; a look forward. UCS Times Nov-Dec 1992: 1-3. Published by University Computing Services, Indiana University Bloomington. http://hdl.handle.net/2022/13618

    Stewart, C.A. 1991. More math software; better support. UCS Times Nov-Dec 1991: 20. Published by University Computing Services, Indiana University Bloomington. http://hdl.handle.net/2022/13610

    Stewart, C.A., 1991. Big improvements in statistical software support. UCS Times Sep-Oct 1991: 15-16. Published by University Computing Services, Indiana University Bloomington. http://hdl.handle.net/2022/13609

  • Books and journal issues edited

    Lehner, W., N. Meyer, A. Streit, C. Stewart (eds.). Euro-Par 2006 Parallel Processing: Workshops: In: CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Dresden, Germany (Lecture Notes in Computer Science). Springer-Verlag Berlin Heidelberg.

    SPECIAL ISSUE: Bioinformatics: transforming biomedical research and medical care. Communications of the ACM. 47(11), November 2004. ISSN:0001-0782. http://cacm.acm.org/magazines/2004/11

    Peromyscus Newsletter. Co-editor, 1997-1998. http://stkctr.biol.sc.edu/Peromyscus.Newsletter.htm

  • Tutorials

    Stewart, C.A. and M. Dahan. 2008. Introduction to Parallel Computing on the TeraGrid Part 1: the TeraGrid and Parallel Computing concepts (Tutorial presentation) TeraGrid08 Conference (Las Vegas, NV, 9 Jun 2008). http://hdl.handle.net/2022/13990

    Stewart, C.A. 2007. Resources that matter to you: accessing IU’s Big Red supercomputer and massive data storage system via the TeraGrid . (Tutorial presentation) IEEE 7th International conference on BioInformatics & BioEngineering (Boston, MA, 14 Oct 2007). http://hdl.handle.net/2022/13992

    Stewart, C.A. 2006. Scientific Data Management. (Tutorial presentation) PittCon 2006 (Orlando, FL, 13 Mar 2006). http://hdl.handle.net/2022/13993

    Stewart, C.A. 2005. Introduction to computational biology. (Tutorial presentation) High Performance Computing Center (Stuttgart, Germany, 1 July 2005). http://hdl.handle.net/2022/13995

    Stewart, C.A. 2005. Scientific Data Management. (Tutorial presentation) PittCon 2005 (Orlando, FL, 3 Mar 2005). http://hdl.handle.net/2022/13996

    Stewart, C.A., R. Repasky and A.D. Arenson. 2004. Open source tools for computational biology. (Tutorial presentation) IEEE/ACM SC04 Conference (Pittsburgh, PA, 7 Nov 2004). http://hdl.handle.net/2022/13997

    Stewart, C.A. 2004. Scientific Data Management. (Tutorial presentation) PittCon 2004 (Chicago, IL, 10 Mar 2004). http://hdl.handle.net/2022/13998

    Stewart, C.A. 2003. Computational Biology. (Tutorial presentation) IEEE/ACM SC03 Conference (Phoenix, AZ, 14 Nov 2003). http://hdl.handle.net/2022/14000

    Stewart, C. 2002. Scientific Data Management. (Tutorial presentation) Laboratory Information Management Systems Conference (LIMS 2002) (Philadelphia, PA, 2 May 2002). http://hdl.handle.net/2022/14001

    Stewart, C.A. 2000. Computational Biology. (Tutorial presentation) IEEE/ACM SC00 Conference (Dallas, TX, Nov 2000). http://hdl.handle.net/2022/14007 (Presented as part of tutorial Simon, H.D., M.D. Zorn, S.J. Spengler, B.K. Shoichet, C.A. Stewart, Dubchak I.L. and A.P. Arkin. Computational Biology and High Performance Computing 2000 (Technical report LBNL-47001) . 2000. Presentation. Presented at: SC2000 (Dallas, TX, 4-10 Nov 2000). http://hdl.handle.net/2022/15225 )

    Hewitt, D., and C.A. Stewart. Online Help Systems and Knowledge Bases: Building a Virtual Helpdesk. Half-day tutorial given at CAUSE96, San Francisco, Dec. ’96. http://hdl.handle.net/2022/13611

  • Poster presentations

    Doak, T., R. LeDuc, L.-S. Wu, C.A. Stewart, R. Henschel and W.K. Barnett. The National Center for Genome Analysis Support (Poster). 2012. Presentation. Presented at: International Conference on Genomics in the Americas (Philadelphia, PA, 27 Sept 2012). http://hdl.handle.net/2022/14769

    Doak, T., R. LeDuc, L.-S. Wu, C.A. Stewart, R. Henschel and W.K. Barnett. The National Center for Genome Analysis Support (Poster). 2012.. Presented at: International Society of Protistologists -- North American Section (North Carolina Central University, Durham, NC, 22 Sept 2012). http://hdl.handle.net/2022/14769

    Doak, T., R. LeDuc, L.-S. Wu, C.A. Stewart, R. Henschel and W.K. Barnett. The National Center for Genome Analysis Support (Poster). 2012. Presentation. Presented at: New Directions for Investigating Biodiversity of Ciliates (North Carolina Central University, Durham, NC, 19 Sept 2012). http://hdl.handle.net/2022/14769

    Doak, T. G., Wu, L.-S., Stewart, C.A., Henschel, R., Barnett, W.K. (2012). National Center for Genome Analysis Support (Poster). (Presentation) Pacific Symposium on Biocomputing Kona, HI, Jan 5 2012. http://hdl.handle.net/2022/14539

    Doak, T. G., Wu, L.-S., Stewart, C.A., Henschel, R., Barnett, W.K. (2012). National Center for Genome Analysis Support (Poster). (Presentation) Plant and Animal Genome Conference San Diego CA, Jan 16, 2012. http://hdl.handle.net/2022/14539

    McCaulay, D.S., M.R. Link, G.W. Turner, D.Y. Hancock, M. Morris and C.A. Stewart. 2006. Powerful New Research Computing System Available via the TeraGrid. (Presentation) IEEE/ACM SC06 Conference (Tampa, FL, 14 Nov 2006). http://hdl.handle.net/2022/13994

    Stewart, C.A., D. Hart, D. K. Berry. 1998. Maximum likelihood estimation of phylogenetic relationships with geographically distributed supercomputers. Presented at CASCON 98, November 30 - December 3, 1998, Toronto, Canada.

  • Abstracts

    Simms, S.C., M. Davy, B. Hammond, M.R. Link, C.A. Stewart, S. Teige, M.-H. Baik, Y. Mantri, R. Lord, D.F.R. McMullen, J.C. Huffman, K. Huffman, G. Juckeland, M. Kluge, R. Henschel, H. Brunst, A. Knuepfer, M. Mueller, P.R. Mukund, A. Elble, A. Pasupuleti, R. Bohn, S. Das, J. Stefano, G.G. Pike and D.A. Balog. 2007. Using the Data Capacitor for Remote Data Colleciton, Analysis, and Visualization. IEEE/ACM 2007 Conference (Reno, NV, 13 Nov 2007). http://hdl.handle.net/2022/13991

    McCaulay, D.S., M.R. Link, G.W. Turner, D.Y. Hancock, M. Morris and C.A. Stewart. 2006. Powerful New Research Computing System Available via the TeraGrid. (Presentation) IEEE/ACM SC06 Conference (Tampa, FL, 14 Nov 2006). http://hdl.handle.net/2022/13994

    Hart, D., J. Palmer, W. Fischer, S. Turner, D.K. Berry, E. Wernert, C.A. Stewart, T.W. Tan, M. Sakharkar, L.X. Zhang, M. Buchhorn and T. Potter. Maximum Likelihood Analysis of Phylogenetic Data. 1998. Presentation. Presented at: IEEE/ACM SC98 Conference (Orlando, FL, Nov 1998). http://hdl.handle.net/2022/13893

    Hart, D., D.A. Lauer, J.W. Naab, C.A. Stewart and D.F. McMullen. PC Clusters: Performance Comparisons in NT and Linux Environments (Abstract) . 2000. Presentation. Presented at: Society for Industrial and Applied Mathematics First SIAM Conference (Washington D.C., 24 Sept 2000). http://hdl.handle.net/2022/15224

    Hart, D., Palmer, J., Fischer, W., Turner, S.; Berry, D.K., Wernert, E., Stewart, C.A., Tan, T.W., Sakharkar, M., Zhang, L.X., Buchhorn, M., Potter, T. 1998. Maximum Likelihood Analysis of Phylogenetic Data. Presented at IU Display in Exhibitor’s Forum at SC98 (Orlando, FL, 7-13 Nov, 1998). http://hdl.handle.net/2022/13893 or http://www.startap.net/igrid98/maxLikeAnApbionet98.html

    Stewart, C.A. 1988. Diurnal variation in minimal thermal conductance of the white footed mouse (Peromyscus leucopus). American Sociaty of Mammalogists Annual Meeting, Clemson University, Clemson, SC.

    Stewart, C.A. 1982. Age-specific changes in diet and Cesium-127 whole body concentration in turtles (Pseudemys scripta) onhabiting a contaminated swamp. Midwest Ecology Symposium, Michigan State University, East Lansing, MI

    Valentine, D.W. and C.A. Stewart. A preliminary analysis of diet and resource partitioning in Etheostoma caeruleum Storer and Etheostoma flabellare Rafinesque in Rock Run, Clark County, Ohio. Ohio Journal of Science April Program Abstracts. Ohio Academy of Science 90th Annual Meeting. 1981. http://hdl.handle.net/2022/15227

    Reash, R.J. and C.A. Stewart. Preliminary investigations of longitudinal distribution and fish species diversity in Rock Run, Clark County, Ohio. (Abstract). Bios, 52(3), 178. 1981. http://hdl.handle.net/2022/15228

  • Presentations

    2017

    Stewart, C.A. New trends in cyberinfrastructure for ecology and evolutionary biology. IU graduate seminar in bioinformatics. Bloomington, IN, 29 January 2017. Retrieved from http://hdl.handle.net/2022/21264

    Stewart, C.A. and D.Y. Hancock. 2017. Next Generation Cyberinfrastructure for Biological Research. Center for Genomics and Bioinformatics Seminar. Bloomington, IN, USA. 27 September 2017. Retrieved from http://hdl.handle.net/2022/21845

    Stewart, C.A., and M. Krefeldt. 2017. You’re worth it: Putting health before work. Presentation. IU Statewide IT Conference. Retrieved from http://hdl.handle.net/2022/21849

    Stewart, C.A., M.R. Link, J. Wernert. 2017. Measuring ROI in Cyberinfrastructure. Presentation. Presented EDUCAUSE Annual Conference 31 Oct – 3 Nov 2017, Philadelphia, PA. https://doi.org/10.5967/K85Q4T8S

    2016

    Stewart, C.A. & Fischer, J. (2016). Jetstream - In production & ready to go. Talk presented at the meeting of the XSEDE Research Allocation Committee, 4 December, Orlando, FL. Retrieved from http://hdl.handle.net/2022/21132.

    Stewart, C.A., D.Y. Hancock, J. Laherty. 2016. Jetstream – In production & supporting science. Presented in IU display in Exhibition Hall at SC’16, Nov 15, Salt Lake City, Utah. http://hdl.handle.net/2022/21090

    Stewart, C.A. 2016. Jetstream update for CASC (Coalition for Academic Scientific Computation). Presented at CASC Meeting 15 September 2016, Arlington, VA. Retrieved from http://hdl.handle.net/2022/21105

    Stewart, C.A. 2016. Watson, Medicine, Health, and IU Grand Challenges. Presented at Cook Group, Bloomington, IN, 14 September 2016. Retrieved from http://hdl.handle.net/2022/21102

    Stewart, C.A. 2016. Jetstream - An NSF-funded cloud resource for researchers working in the long tail of science. Retrieved from http://hdl.handle.net/2022/21104 . University of Wyoming, Laramie WY, 19 May 2016.

    Stewart, C.A. 2016. Cyberinfrastructure from scratch. Presented at University of Wyoming Laramie WY, 19 May 2016. Retrieved from http://hdl.handle.net/2022/21103

    Stewart, C.A. 2016. IU cyberinfrastructure – supercomputers and clouds in the context of initiatives toward exascale. IU Bloomington Astronomy Department symposium. Apr 26 2016. Presented at Swain Hall, Indiana University, Bloomington, IN. Retrieved from http://hdl.handle.net/2022/21101

    Stewart, C.A. 2016. Exascale—on what dimension, and why? Invited Plenary talk, SPPEXA Annual Meeting 26 Jan 2016 Technische Universität München. http://hdl.handle.net/2022/20928

    2015

    Stewart, C.A. 2015. UITS Research Technologies – Services Available to Regenstrief Institute. Presentation. Presented at Regenstrief Institute, Indiana University Purdue University Indianapolis, Indianapolis. 13 October 2015. http://hdl.handle.net/2022/20438.

    Stewart, Craig A. 2015. Cyberinfrastructure for Research: From campus growth to national trends (Parts I & III of III). Presentation. Presented at Michigan State University, East Lansing, MI. 22 October 2015. http://hdl.handle.net/2022/20442

    Stewart, Craig A. 2015. Cyberinfrastructure for Research: From campus growth to national trends (Part ll of III). Presentation. Presented at Michigan State University, East Lansing, MI. 22 October 2015. http://hdl.handle.net/2022/20443

    September 30 2015. Presented at University of Michigan, Ann Arbor, MI 21 October 2015. http://hdl.handle.net/2022/20444

    Stewart, Craig A. Cyberinfrastructure for Research: New Trends and Tools (Part ll of II). Presented at University of Michigan, Ann Arbor, MI. 21 October 2015. http://hdl.handle.net/2022/20445

    Stewart, C.A. 2015. Cyberinfrastructure for Research: New Trends and Tools (Part 1 of 2). Presentation. University of Vermont, Burlington, VT. 30 September 2015. http://hdl.handle.net/2022/20414

    C.A. 2015. Cyberinfrastructure for Research: New Trends and Tools (Part 2 of 2). Presentation. University of Vermont, Burlington, VT. 30 September 2015. https://scholarworks.iu.edu/dspace/handle/2022/20416

    Stewart, C.A. 2015. Jetstream Overview - XSEDE ’15, part of Panel - New and emerging US cyberinfrastructure resources. Presentation. XSEDE’15, July 26 - 30, 2015. St. Louis, MO, USA. http://http://hdl.handle.net/2022/20322; DOI: http://dx.doi.org/10.5967/K8Z60KZ9

    Stewart, C.A. 2015. Jetstream - A self-provisioned, scalable science and engineering cloud environment. Presentation. XSEDE’15, July 26 - 30, 2015. St. Louis, MO, USA. http://hdl.handle.net/2022/20338

    Stewart, C.A. 2015. XSEDE Value Added, Cost Avoidance, and Return on Investment (Full Talk). Presentation. XSEDE’15, July 26 - 30, 2015. St. Louis, MO, USA. http://hdl.handle.net/2022/20337

    Stewart, C.A., Roskies, R., Knepper, R., Moore, R., Whitt, J., Cockerill, T. 2015. XSEDE Value Added, Cost Avoidance, and Return on Investment – Lightning talk. Presentation. XSEDE’15, July 26 - 30, 2015, St. Louis, MO, USA. http://hdl.handle.net/2022/20145; DOI http://dx.doi.org/10.5967/K8TD9V7F

    Stewart, C.A. 2015. Sustained Software for Cyberinfrastructure-Analyses of Successful Efforts with a Focus on NSF-funded Software. Presentation. SCREAM ‘15. Portland, OR. 16 June 2015. http://hdl.handle.net/2022/20159

    Stewart, C.A. 2015. Jetstream Overview. For XRAC (Large Resource Allocations Committee (LRAC) and Medium Resource Allocations Committee (MRAC). Presentation. XRAC Quarterly Meeting, New Orleans, LA. March 1, 2015. http://hdl.handle.net/2022/19702

    Stewart, C.A. 2015. Campus Bridging Update. For XSEDE Quarterly Staff Meeting. Presentation. New Orleans, LA. March 3, 2015. http://hdl.handle.net/2022/21677

    Stewart, C.A. 2015. UITS Research Technologies update for Bloomington Faculty Council Technology Policy Committee. Presentation. 20 February 2015, Bloomington, IN http://hdl.handle.net/2022/21679

    Stewart, C.A. 2015. Indiana University Pervasive Technology Institute – briefing for CACR. Presentation. 21 May 2015, Bloomington, IN. http://hdl.handle.net/2022/21680

    2014

    Newby, G., A. Apon, N. Berente, R. Eigenmann, S. Fratkin, D. Lifka, C.A. Stewart. 2014. Return on investment from academic supercomputing: SC14 Panel. SC14 – the international conference for high performance computing, networking, storage and analysis. 21 Nov 2014. New Orleans, LA. http://hdl.handle.net/2022/19242

    Stewart, C.A. 2014. Big Data, Big Red II, Data Capacitor II, Wrangler, Jetstream, and Globus Online, presented to Microsoft, Inc. visiting group. Presentation. Indiana University, Bloomington, IN. 24 Feb 2015. http://hdl.handle.net/2022/19685

    Stewart, C.A. 2014. Serving national scientific communities: Genome analysis as an example. Invited keynote talk. Presented at Zentren fuer Kommunikation ind Informationzverarbeitung e.V. ZKI-Frühjahrstagung 25 March 2014 at Humboldt-Universität zu Berlin. http://hdl.handle.net/2022/17383

    Stewart, C.A. 2014. High Performance Computing serving Life Science Research Needs. Presentation. Presented at Universitaet zu Koeln, Koeln, Germany, 3 July 2014. http://hdl.handle.net/2022/18507

    Stewart, C.A. 2014. Serving national scientific communities - genome analysis as an example. ZKI-Frühjahrstagung, Berlin, Deutschland. 25 March 2014. http:// http://hdl.handle.net/2022/17383

    Stewart, C.A. (2014). Cyberinfrastructure as a strategic university asset - for Hessian HPC Competence Center Leaders. Presentation. Presented at Technische Universitaet Darmstadt, Darmstadt, Germany, 30 June 2014. http://hdl.handle.net/2022/18476

    Stewart, C.A. (2014). Information technology support for your local university community - Presentation for IT staff of TU-Darmstadt. Presentation. Presented at Technische Universitaet Darmstadt, Darmstadt, Germany, 30 June 2014. http://hdl.handle.net/2022/18475

    Stewart, C.A. 2014. XSEDE Value Added and Financial Economies. Presentation. NSF Review of XSEDE, 17 September 2014, Arlington, VA. http://hdl.handle.net/2022/21678

    2013

    Stewart, C.A. 2013. This was unexpected. Keynote talk. Open Science Grid All Hands Meeting. 11 March 2013. Indianapolis, IN.

    Stewart, C.A. 2013. Cyberinfrastructure at IU and the IU Pervasive Technology Institute. Presentation for Deutsche Forschungsgemeinschaft (beim Bureau in Washington DC). http://hdl.handle.net/2022/15470

    Stewart, C.A. 2013. Cyberinfrastructure as a strategic university asset. Invited Colloquium. Presented at RWTHAachen University, Aachen, Germany, 23 August 2013. http://hdl.handle.net/2022/16743

    2012

    Stewart, C.A., M. Jacobs, B. Hallock, R. Knepper and W.K. Barnett. Get the convenience of cloud while keeping your rights – through the IU / Penguin Computing partnership . 2012. Presentation. (2012). http://hdl.handle.net/2022/14704

    Jacobs, M. and C.A. Stewart. 2012. Penguin Computing / IU Partnership HPC “cluster as a service” and Cloud Services . (Presentation) Coalition for Academic Scientific Computation (Arlington, VA, 29 Feb). http://hdl.handle.net/2022/14441

    Stewart, C.A. 2012. Campus Bridging. (Presentation) XSEDE (eXtreme Enviroment for Science and Engineering Discovery) Advisory Board Meeting (Chicago, IL, 23 Apr). http://hdl.handle.net/2022/14443

    Stewart, C.A. 2012. Cyberinfrastructure Begins at Home. (Presentation) Rutgers University (New Brunswick, NJ, 20 Feb). http://hdl.handle.net/2022/14442

    Stewart, C.A., S. Marru, R. Knepper, D.Y. Hancock, J. Wernert, C. Aikman, J. Bolte, P. Brown and T.M. Miller. 2012. Indiana University collected XSEDE update. (Presentation) XSEDE (eXtreme Enviroment for Science and Engineering Discovery) Quarterly Meeting (Austin, TX, 6-7 Mar). http://hdl.handle.net/2022/14444

    Stewart, C.A. 2012. “What is campus bridging and why should XSEDE Campus Champions Care?” Presentation. Presented to XSEDE Campus Champions 8 June 2012. Presented to campus champions virtual meeting from Michigan City, IN. http://hdl.handle.net/2022/14709

    Stewart, C.A. 2012. “WBS 1.6.5 Campus Bridging Program Plan” Presentation. Presented to NSF review panel 14 June 2012. Arlington VA. http://hdl.handle.net/2022/14710

    Stewart, C.A. 2012. XSEDE12 closing remarks. Presentation. Presented at XSEDE12, Chicago, IL. 16-20 July 2012 http://hdl.handle.net/2022/14711

    Stewart, C.A. 2012. XSEDE12 opening remarks. Presentation. Presented at XSEDE12, Chicago, IL. 16-20 July 2012 http://hdl.handle.net/2022/14712

    Stewart, C.A., R. Knepper, J.W. Ferguson, F. Bachmann, I. Foster, A. Grimshaw, V. Hazlewood and D. Lifka. What is campus bridging and what is XSEDE doing about it? 2012. Presentation. Presented at: XSEDE12 (Chicago, IL, 16-20 Jul 2012). http://hdl.handle.net/2022/14599

    Stewart, C.A. 2012. Campus Bridging Security Challenge. From “Panel: Security for Science Gateways and Campus Bridging”. Jim Basney, Randy Butler, Dan Fraser, Surresh Marru, Craig A. Stewart. Presented at XSEDE12, Chicago, IL 16-20 July 2012. http://hdl.handle.net/2022/14713

    2011

    Stewart, C.A. and V. Welch. 2011. Overview of NSF ACCI Task Force on Campus Bridging Report. (Presentation) Coalition for Academic Scientific Computation Meeting (Arlington, VA, 16 Mar 2011). http://hdl.handle.net/2022/13421

    Stewart, C.A. 2011. Educational Applications of Supercomputing and Cyberinfrastructure . (Presentation) KAUST Economic Development International Symposium at ISC'11 (Hamburg, Germany, June 21). http://hdl.handle.net/2022/13365

    Stewart, C.A. 2011. Management and organizational structure of large scale innovative projects . (Presentation) FLEET Working Group Meeting (Vienna, Austria, 19 July 2011). http://hdl.handle.net/2022/13403

    Stewart, C.A. 2011. Communicating with government & public stakeholders. (Presentation) FLEET Working Group Meeting (Vienna, Austria, 19 July 2011). http://hdl.handle.net/2022/13404

    Stewart, C.A. 2011. A tale of two grids -- Open Science Grid & TeraGrid. (Presentation) FLEET Working Group Meeting (Vienna, Austria, 20 July 2011). http://hdl.handle.net/2022/13405

    Stewart, C.A. 2011. XSEDE Campus Bridging. (Presentation) CASC (Coalition for Academic Scientific Computation) Meeting (Arlington, VA, 7 Sept 2011). http://hdl.handle.net/2022/13608

    Knepper, R., C.A. Stewart and J.W. Ferguson. 2011. XSEDE Campus Bridging Birds of a Feather. (Presentation) TeraGrid '11 (Salt Lake City, UT, 18-21 Jul). http://hdl.handle.net/2022/13423

    Stewart, C.A. 2011. XSEDE Campus Bridging. (Presentation) XSEDE Quarterly Meeting (Pittsburgh, PA, 31 Aug 2011). http://hdl.handle.net/2022/13909

    Stewart, C.A., R. Henschel, W.K. Barnett and T. Doak. 2011. Experiences with a large-memory HP cluster – performance on benchmarks and genome codes . (Presentation) HP-CAST 17 - HP Consortium for Advanced Scientific and Technical Computing World-Wide User Group Meeting (Seattle, WA, 12 Nov 2011). http://hdl.handle.net/2022/13879

    Stewart, C.A., M.R. Link, G. Turner and W.K. Barnett. 2011. Penguin Computing and Indiana University partner for "above campus" and campus bridging services to the community . (Presentation) IEEE/ACM SC11 Conference (Seattle, WA, 14-17 Nov 2011). http://hdl.handle.net/2022/13880

    Stewart, C.A. and B.C. Wheeler. 2011. Cyberinfrastructure Begins at Home. (Presentation) IBM Multi-customer Briefings, IEEE/ACM SC11 Conference (Seattle, WA, 15 Nov 2011). http://hdl.handle.net/2022/13888

    2010

    Stewart, C.A. 2010. Future of Supercomputer Centers: an evolutionary ecology view. (Presentation) “Future of Supercomputing Centers” Panel, IEEE/ACM SC10 Conference (New Orleans, LA, 19 Nov 2010). http://hdl.handle.net/2022/9918 (Panel organizer: Thom Dunning, NCSA)

    Stewart, C.A. 2010. It's not a data deluge - it's worse than that (Keynote address). (Presentation) DIDC'10 (Chicago, IL, 22 Jun). http://hdl.handle.net/2022/13195

    Stewart, C.A. 2010. FutureGrid: an experimental, high-performance grid testbed. (Presentation) TeraGrid Quarterly Meeting (Tampa Bay, FL, 1-3 Mar 2010). http://hdl.handle.net/2022/13911

    Stewart, C.A. 2010. What is Cyberinfrastructure? (Presentation) ACM SIGUCCS 2010 Annual Meeting (Norfolk, VA, 24-27 Oct 2010). http://hdl.handle.net/2022/13987

    Stewart, C.A. NSF ACCI (Advisory Committee for Cyberinfrastructure) Taskforce Update. 2010. Presentation. Presented at: CASC meeting (Arlington, VA, 22 March 2010). http://hdl.handle.net/2022/14526

    Stewart, C.A. and S.C. Simms. 2010. Indiana University's Lustre WAN: Empowering Production Workflows on the TeraGrid and beyond . (Presentation) TeraGrid Forum (Distributed virtual meeting, 20 May 2010). http://hdl.handle.net/2022/13912

    2009

    Stewart, C.A. 2009. Campus Bridging Task Force. (Presentation) ACCI Task Force Birds of a Feather Session, ACM / IEEE SC09 Conference (Portland, OR, 14-20 Nov 2009). http://hdl.handle.net/2022/13908

    Stewart, C.A. 2009. Campus Bridging Task Force. (Presentation) NSF Advisory Committee for Cyberinfrastructure (Arlington, VA, 2-3 Dec 2009). http://hdl.handle.net/2022/13908

    Stewart, C.A. 2009. FutureGrid: an experimental, high-performance grid testbed. (Presentation) TeraGrid Science Advisory Board meeting, Quarterly Meeting (Arlington, VA, 10-11 Dec 2009). http://hdl.handle.net/2022/13900

    Stewart, C.A. 2009. The future is cloudy. (Presentation) Technische Universitaet Dresden (Dresden, Germany, 18 Jun 2009). http://hdl.handle.net/2022/13913

    Stewart, C.A. 2009. FutureGrid: an experimental, high-performance grid testbed. (Presentation) National Center for Supercomputer Applications (Champaign-Urbana, IL, 21 Oct 2009). http://hdl.handle.net/2022/13899

    Stewart, C.A. 2009. Big Red, the Data Capacitor, and the future (clouds). (Presentation) University of Houston (Houston, TX, 2 Mar 2009). http://hdl.handle.net/2022/13940

    Stewart, C.A. 2009. Welcome to IU Purdue IBM Supercomputing Lunch. (Presentation) IUPUI (9 Feb 2009). http://hdl.handle.net/2022/13941

    Stewart, C.A. 2009. Everything happens somewhere (Keynote). (Presentation) Indiana Geographic Information Council Annual Meeting (Bloomington, IN, 18 Feb 2009). http://hdl.handle.net/2022/13942

    Stewart, C.A. 2009. Where are we, and where ought we be going? (Presentation) UITS Brownbag Presentation Series (Bloomington, IN, 29 Apr 2009). http://hdl.handle.net/2022/13943

    Stewart, C.A. 2009. Pervasive Technology Institute overview. (Presentation) PTI RT All Hands Meeting (Bloomington, IN, 22 May 2009). http://hdl.handle.net/2022/13967

    Stewart, C.A. 2009. Cyberinfrastructure in research, education, and workforce development . (Presentation) Kentucky EPSCOR strategic planning meeting (Lexington, KY, 23 Jul 2009). http://hdl.handle.net/2022/13968

    Stewart, C.A. 2009. Where are we, and where ought we be going? (Presentation) University of Houston Department of Computer Science Distinguished Lecture Series (Houston, TX, 2 Mar 2009). http://hdl.handle.net/2022/13988

    Stewart, C.A. 2009. The year that was … 2009 for PTI, RT, and our collaborators. (Presentation) Pervasive Technology Institute – Research Technologies all hands meeting (Bloomington, IN, 15 Dec 2009). http://hdl.handle.net/2022/13989

    2008

    Stewart, C.A. The TeraGrid: An essential tool for 21st century science. 2008. Presentation. Presented at: Annual Meeting of the American Association for Advancement of Science (Boston, MA, 17 February 2008). http://hdl.handle.net/2022/14527

    Stewart, C.A., C. Jordan and S.C. Simms. Data gateways for scientific communities -- Birds of a Feather Session . 2008. Presentation. Presented at: TeraGrid '08 (Las Vegas, NV, 9-13 Jun 2008). http://hdl.handle.net/2022/14528

    Almes, G.T., P. Dreher and C.A. Stewart. Making campus cyberinfrastructure work for your campus. 2008. Presentation. Presented at: EDUCAUSE 2008 (Orlando, FL, 28-31 Oct 2008). http://hdl.handle.net/2022/14529

    Stewart, C.A. IT/Library partnerships at IU: almost two decades (and counting). 2008. Presentation. Presented at: Brown University Library (Providence, RI, 21 Apr 2008). http://hdl.handle.net/2022/14601

    Stewart, C.A. Research Technologies at Indiana University Brown Bag Series Presentation. 2008. Presented at: Brown Bag Series Presentation (Indiana University, Bloomington, IN, 9 Oct 2008). http://hdl.handle.net/2022/14602

    Stewart, C.A. Research Technologies: what a long, strange trip it’s been (and will continue to be). 2008. Presentation. Presented at: BIO Brownbag Presentation Series (Indiana University, Bloomington, IN, 8 Apr 2008). http://hdl.handle.net/2022/14603

    2007

    Simms, S.C., M. Davy, B. Hammond, M.R. Link, C.A. Stewart, S. Teige, M.-H. Baik, Y. Mantri, R. Lord, D.F.R. McMullen, J.C. Huffman, K. Huffman, G. Juckeland, M. Kluge, R. Henschel, H. Brunst, A. Knuepfer, M. Mueller, P.R. Mukund, A. Elble, A. Pasupuleti, R. Bohn, S. Das, J. Stefano, G.G. Pike and D.A. Balog. 2007. Using the Data Capacitor for Remote Data Colleciton, Analysis, and Visualization . (Presentation) IEEE/ACM 2007 Conference (Reno, NV, 13 Nov 2007). http://hdl.handle.net/2022/13991

    Stewart, C.A. and R. Repasky. High Performance Computing for University Medical Research: A Successful Implementation . 2007. Presentation. Presented at: Bio-IT World Conference & Expo (Boston, MA, 24-26 Apr 2007). http://hdl.handle.net/2022/14600

    Stewart, C.A. Research Computing - University Information Technology Services. 2007. Presentation. Presented at: IUPUI Faculty Council IT Conference (Indianapolis, IN, 27 Feb 2007). http://hdl.handle.net/2022/14604

    Stewart, C.A. and M.R. Link. Research Computing - University Information Technology Services. 2007. Presentation. Presented at: Ohio Supercomputer Center (Columbus, OH, 4 Apr 2007). http://hdl.handle.net/2022/14605

    Stewart, C.A. Indiana Economic Development 2007-2010 From Indiana Economic Development Corporation to Indiana and Purdue Universities. 2007. Presentation. Presented at: UITS Research Technologies Retreat (Bradford Woods, Martinsville, IN, 3 Feb 2007). http://hdl.handle.net/2022/14606

    Stewart, C.A. Implementation and experience with Big Red – a 20.4 TFLOPS IBM BladeCenter cluster . 2007. Presentation. Presented at: International Supercomputer Conference (Dresden, Germany, 26 Jun 2007). http://hdl.handle.net/2022/14607

    Stewart, C.A. Implementation and experience with Big Red (a 30.7 TFLOPS IBM BladeCenter cluster), the Data Capacitor, and HPSS). 2007. Presentation. Presented at: UITS Research Technologies Brownbag Lunch (Indianapolis and Bloomington, IN, 1 Nov 2007). http://hdl.handle.net/2022/14608

    Stewart, C.A. University role in preserving research data. 2007. Presentation. Presented at: NSF Crystallography Workshop (Bloomington, IN, 27 Feb 2007). http://hdl.handle.net/2022/14609

    Stewart, C.A. Implementation and experience with Big Red (a 30.7 TFLOPS IBM BladeCenter cluster), the Data Capacitor, and HPSS . 2007. Presentation. Presented at: IU Display, SC2007 Exhibit Hall (Reno, NV, 13 Nov 2007). http://hdl.handle.net/2022/14610

    2006

    Simms, S., M. Davy, B. Hammond, M. Link, C.A. Stewart, R. Bramley, B. Plale, D. Gannon, M.-H. Baik, S. Teige, J. Huffman, D. McMullen, D. Balog and G. Pike. 2006. All in a Day's Work: Advancing Data-Intensive Research with the Data Capacitor . (Presentation) Bandwidth Challenge Competition, IEEE/ACM SC06 Conference (Tampa, FL, 14 and 15 Nov 2006).

    Stewart, C.A. Forschungsvorschlag: BLAST Leistungskennzeichnung, Leistungsanalyse, und Leistungsverbesserung (Research proposal: BLAST performance measurement, analysis, and improvement) . 2006. Presentation. Presented at: Technische Universitaet (Dresden, Germany, 11 Apr 2006). http://hdl.handle.net/2022/14612

    Stewart, C.A. Life Sciences and Cyberinfrastructure: a perspective from Indiana University . 2006. Presentation. Presented at: Colloquium at Technische Universität Dresden (Dresden, Germany, 18 Apr 2006). http://hdl.handle.net/2022/14775

    Stewart, C.A. Life Science Software and High Performance Computing: Seminar Series Part I . 2006. Presentation. Presented at: Technische Universität Dresden (Dresden, Germany, 13 Apr 2006). http://hdl.handle.net/2022/14767

    Stewart, C.A. Life Science Software and High Performance Computing: Seminar Series Part II . 2006. Presentation. Presented at: Technische Universität Dresden (Dresden, Germany, 20 Apr 2006). http://hdl.handle.net/2022/14767

    Stewart, C.A. Life Science Software and High Performance Computing: Seminar Series Part III . 2006. Presentation. Presented at: Technische Universität Dresden (Dresden, Germany, 25 Apr 2006). http://hdl.handle.net/2022/14767

    Stewart, C.A. Life Science Software and High Performance Computing: Seminar Series Part IV . 2006. Presentation. Presented at: Technische Universität Dresden (Dresden, Germany, 27 Apr 2006). http://hdl.handle.net/2022/14767

    Stewart, C.A. Introduction: IU, Information Technology, and Life Sciences. 2006. Presentation. Presented at: Technische Universität Dresden visit to IU (Indianapolis, IN, 12 Mar 2006). http://hdl.handle.net/2022/14748

    Rodgers, G.P. and C.A. Stewart. On the road to petascale processing with IU’s Big Red Supercomputer and IBM BladeCenter H. 2006. Presentation. Presented at: SC|06 (Tampa, FL, 12 Nov 2006). http://hdl.handle.net/2022/14749

    Stewart, C.A. Development of an advanced cyberinfrastructure at Indiana University . 2006. Presentation. Presented at: IBM Watson Research Center (5 Jun 2006). http://hdl.handle.net/2022/14768

    2005

    Stewart, C.A. and G.R. Bertoline. I-Light: A Network for Collaboration between Indiana University and Purdue University . 2005. Presentation. Presented at: I-Light Conference (Indianapolis, IN, 22 Sept 2005). http://hdl.handle.net/2022/14772

    Stewart, C.A. Information Technology as an enabler of Life Sciences Research. 2005. Presentation. Presented at: Statewide IT Conference (Indianapolis, IN, 24 Sept 2005). http://hdl.handle.net/2022/14771

    Stewart, C.A. Research and computing. 2005. Presentation. Presented at: Statewide IT Conference (Indianapolis, IN, 25 Sept 2005). http://hdl.handle.net/2022/14776

    Stewart, C.A. and W. Stephan. The Health & Life Sciences Economy of Indiana: Today and Tomorrow . 2005. Presentation. Presented at: TechPoint Tech Summit (Indianapolis, IN, 1 Nov 2005). http://hdl.handle.net/2022/14777

    Stewart, C.A. IBM – IU Recent Research Activities and Collaboration Opportunities . 2005. Presentation. (Bloomington, IN, 18 May 2005). http://hdl.handle.net/2022/14774

    Stewart, C.A. Recent key achievements in research computing at IU. 2005. Presentation. Presented at: IBM corporate visit (Bloomington, IN, Oct 2005). http://hdl.handle.net/2022/14773

    2004

    Stewart, C.A. Bioinformatics: Have fun, change the world. 2004. Presentation. Presented at: Marian College (Indianapolis, IN, 1 Dec 2004). http://hdl.handle.net/2022/14778

    Stewart, C.A. BioGrids in the US: Current status and future opportunities. 2004. Presentation. Presented at: International School on Physics and Industry workshop on Particle Accelerators and Detectors: from Physics to Medicine (Ettore Majorana Foundation and Center for Scientific Culture, Erice, Italy, 15 Apr 2005). http://hdl.handle.net/2022/14780

    Stewart, C.A. Transforming life science research with advanced Information Technology at Indiana University . 2004. Presentation. Presented at: IBM Life Sciences Symposium (Pallisades, NY, 31 May 2004). http://hdl.handle.net/2022/14785

    Stewart, C.A. Information Technology Leadership & Strategies in the Life Sciences . 2004. Presentation. (Kelley School of Business, Bloomington, IN, 2 Dec 2004). http://hdl.handle.net/2022/14781

    Stewart, C.A., A.D. Arenson and A. Shankar. The centralized life science data service at Indiana University. 2004. Presentation. Presented at: IBM Solutions Seminar (Bethesda, MD, 2 Mar 2004). http://hdl.handle.net/2022/14779

    Stewart, C.A., R. Keller, R. Repasky, M. Hess, D. Hart, M. Müller, R. Sheppard, U. Wössner, M. Aumüller, H. Li, D.K. Berry and J. Colbourne. A Global Grid for Analysis of Arthropod Evolution. 2004. Presentation. Presented at: Grid2004 - 5th IEEE/ACM International Workshop on Grid Computing (Pittsburgh, PA, 8 Nov 2004). http://hdl.handle.net/2022/14784

    Stewart, C.A., R. Keller, M. Hess, U. Wössner, M. Aumüller, M. Müller, R. Repasky, D. Hart, H. Li and D.K. Berry. Global grid analysis of arthropod evolution – a successful grid project . 2004. Presentation. Presented at: 7th HLRS Metacomputing and GRID Workshop (Stuttgart, Germany, 26 Apr 2004). http://hdl.handle.net/2022/14782

    Stewart, C.A., R. Repasky, J. Colbourne, D. Hart, D.K. Berry, R. Sheppard, E. Wernert, M. Papakhian and J.N. Huffman. Global Analysis of Arthropod Evolution. 2004. Presentation. Presented at: I-Light Conference (Indianapolis, IN, 9 Mar 2004). http://hdl.handle.net/2022/14783

    2003

    Keller, R., M. Hess, R. Repasky, J. Colbourne, C.A. Stewart, D. Hart, J. Steinbachs, U. Wössner, D.K. Berry, M. Müller and H. Li. Global Analysis of Arthropod Evolution. 2003. Presentation. Presented at: HPC Challenge, SC|03 (Phoenix, AZ, 19 Nov 2003). http://hdl.handle.net/2022/14806

    Peebles, C.S., C.A. Stewart, B.D. Voss and S.B. Workman. Measuring Quality, Cost, and Value of IT Services. 2003. Presentation. Presented at: Meeting of Indianapolis ASQ Section 0903 (Indianapolis, IN, 14 Jan 2003). http://hdl.handle.net/2022/15213

    Stewart, C.A. Information technology, collaboration, and achieving IU’s research goals . 2003. Presentation. Presented at: Indiana University Research Symposium (Indiana University, Bloomington, IN, 13 Nov 2003). http://hdl.handle.net/2022/14805

    Stewart, C.A. Research & Academic Computing. 2003. Presentation. Presented at: Indiana University Statewide IT Conference (Indianapolis, IN, 11 Sept 2003). http://hdl.handle.net/2022/15215

    Stewart, C.A. Computational Biology: Practical lessons and thoughts for the future . 2003. Presentation. Presented at: Facultaet Informatik (Universitaet Stuttgart, Stuttgart, Germany, 25 Jun 2003). http://hdl.handle.net/2022/15218

    Stewart, C.A. Computational Biology: Practical lessons and thoughts for the future . 2003. Presentation. Presented at: ZIH, Technische Universität Dresden (Dresden, Germany, 19 Jun 2003). http://hdl.handle.net/2022/14802

    Stewart, C.A. Computational Biology: Practical lessons and thoughts for the future . 2003. Presentation. (Universität Stuttgart, Stuttgart, Germany, 17 Jun 2003). http://hdl.handle.net/2022/14804

    Stewart, C.A. 2003. "1 TFLOPS achieved with a distributed Linux Cluster," Department of Computer Science Colloquium, University of Stuttgart, Germany, 28 May.

    Stewart, C.A. Current challenges and opportunities in Biogrids. 2003. Presentation. Presented at: 6th Metacomputing Symposium (High Performance Computing Center, Universitaet Stuttgart, Stuttgart, Germany, 22 May 2003). http://hdl.handle.net/2022/15217

    Stewart, C.A. Overview of IU activities in supercomputing, grids, and computational biology . 2003. Presentation. (Universität Stuttgart, Stuttgart, Germany, 14 May 2003). http://hdl.handle.net/2022/14803

    Stewart, C.A.. 2003. "INGEN's advanced IT facilities," Presented to Dept. of Psychiatry, IU School of Medicine. February, 2003. http://hdl.handle.net/2022/15222

    Stewart, C.A. 2003. "INGEN's advanced IT facilities," Presented to Dept. of Physiology, IU School of Medicine. February, 2003. http://hdl.handle.net/2022/15222

    Stewart, C.A., A. Arenson and A. Shankar. The Centralized Life Sciences Data Service at Indiana University. 2003. Presentation. Presented at: IBM/Lilly/IU Data Integration Conference (Indianapolis, IN, 17 Jan 2003). http://hdl.handle.net/2022/15216

    Stewart, C.A., and R. Repasky. 2003. High Performance Computing for University Medical Research: A Successful Implementation. 26 Mar, BioITWorld 2003 Conference, Cambridge Healthtech Institute, Boston, MA.

    Stewart, C.A. and E. Wernert. Computational Biology: Data, computation, and visualization. 2003. Presentation. Presented at: Visualization Workshop (Arctic Region Supercomputer Center, University of Alaska Fairbanks, 7 Aug 2003). http://hdl.handle.net/2022/15219

    2002

    Repasky, R., D. Hart, and C.A. Stewart. 2002. The Indiana Genomics Information Technology Core. INGEN Proteomics Symposium. 15 November, Indianapolis, IN.

    Stewart, C.A. 2002. "INGEN's advanced IT facilities," Presented to Division of Nephrology, IU School of Medicine. November, 2002. http://hdl.handle.net/2022/15222

    Stewart, C.A. 2002. "INGEN's advanced IT facilities," Presented to Indiana Health Industry Forum meeting, October 2002. http://hdl.handle.net/2022/15222

    Stewart, C.A. 2002. "INGEN's advanced IT facilities," Presented to Wells Center, IU School of Medicine. June, 2002. http://hdl.handle.net/2022/15222

    Stewart, C.A. 2002. "Indiana University facilities in support of Bioinformatics Research" School of Informatics, Indianapolis, IN.

    Stewart, C.A. 2002. "Opportunities in bioinformatics," Department of Biology, Wittenberg University, Springfield, OH. April 28, 2002.

    Stewart, C.A. 2002. "INGEN's advanced IT facilities," Presented to Department of Endocrinology, IU School of Medicine. March, 2002. http://hdl.handle.net/2022/15222

    Stewart, C.A. INGEN's advanced IT facilities. 2002. Presentation. Presented at: Department of Medical Genetics (IU School of Medicine, Indianapolis, IN, 8 Jan 2002). http://hdl.handle.net/2022/15222

    Stewart, C.A. (convenor). 2002. "Computational Biology," Panel session at SC2002 conference. November 2002, Baltimore, MD. http://www.sc-conference.org/sc2002/

    Stewart, C.A. Implementing advanced IT facilities for the Indiana Genomics Initiative . 2002. Presentation. Presented at: HPC User Forum (Santa Fe, New Mexico, 23 Apr 2002). http://hdl.handle.net/2022/15220

    2001

    Peebles, C.S., C.A. Stewart, B.D. Voss and S.B. Workman. 2001. Measuring Quality, Cost, and Value of IT Services. (Presentation) EDUCAUSE 2001 (Indianapolis, IN, 29 October 2001). http://hdl.handle.net/2022/13896

    Peebles, C.S., C.A. Stewart, B.D. Voss and S.B. Workman. 2001. Measuring Quality, Cost, and Value of IT Services. (Presentation) 55th Annual Quality Congress (Charlotte, NC, 8 May 2001). http://hdl.handle.net/2022/13897

    Stewart, C.A., D. Hart, D.K. Berry, G.J. Olsen, E.A. Wernert and W. Fischer. 2001. Parallel implementation and performance of fastDNAml: a program for maximum likelihood phylogenetic inference . (Presentation) ACM/IEEE SC01 Conference (Denver, Colorado, 14 Nov 2001). http://hdl.handle.net/2022/14004

    Stewart, C.A. 2001. IT at IU. (Presentation) IBM T.J. Watson Research Center (Hawthorne, NY, 7 Feb 2001). http://hdl.handle.net/2022/14005

    Stewart, C.A. 2001. Services overview for School of Medicine and Indiana Genomics Initiative . (Presentation) IU School of Medicine (Indianapolis, IN, 28 Aug 2001). http://hdl.handle.net/2022/14003

    2000

    Stewart, C.A. 2000. University Information Technology Services. (Presentation) Meeting of IUPUI Research Deans (Indianapolis, IN, March 2000). http://hdl.handle.net/2022/14006

    Stewart, C.A. 2000. Status of IU’s E10000 and recent activities with Sun. (Presentation) Indiana University Wrubel Computing Center (Bloomington, IN, 14 Jun 2000). http://hdl.handle.net/2022/14009

    Stewart, C.A. and Z. Meglicki. 2000. High Performance Storage System at Indiana University. (Presentation) High Performance Computing Center, University of Stuttgart symposium on massive storage systems. Jan 18, 2000.

    Hart, D., Lauer, D.A., J.W. Naab, C.A. Stewart, and D.F. McMullen. 2000. Performance of parallel programs on PC clusters: NT vs. Linux. Presented at 2000 SIAM conference on Computational Science and Engineering, 21-24 September, Washington, D.C. www.siam.org/meetings/cse00/

    1990s

    Stewart, C.A. 1999. IU’s Compaq Parallel PC Cluster. (Presentation) Compaq - Indiana University Visit (Bloomington, IN, 17 Mar 1999). http://hdl.handle.net/2022/13898

    Stewart, C.A. 1999. Evolutionary Biology and Computational Grids. (Presentation) CASCON Workshop on Computational Biology (Mississauga, Ontario, Canada, 10 Nov 1999). http://hdl.handle.net/2022/14010

    Hart, D., J. Palmer, W. Fischer, S. Turner, D.K. Berry, E. Wernert, C.A. Stewart, T.W. Tan, M. Sakharkar, L.X. Zhang, M. Buchhorn and T. Potter. Maximum Likelihood Analysis of Phylogenetic Data. 1998. Presentation. Presented at: IEEE/ACM SC98 Conference (Orlando, FL, Nov 1998). http://hdl.handle.net/2022/13893

    Voss, B.D., D. Jung-Gribble and C.A. Stewart. 1996. The Leveraged Support Model. (Presentation) CUMREC '96 (Nashville, TN, May 1996). http://hdl.handle.net/2022/14011

    1980s

    Stewart, C.A. 1986. Diurnal variation in metabolic parameters of white-footed mice (Peromyscus leucopus). Presented at annual meeting, American Society of Mammalogists, May, 1986.

    Stewart, C.A. 1982. The effects of the water soluble fraction of fuel oil on the development of the brine shrimp (Artemia salina Leach). Ohio Ecology Student Symposium, Miami University, Miami, OH.

    Stewart, C.A. 1982. Age-specific changes in diet and Cesium-127 whole body concentration in turtles (Pseudemys scripta) onhabiting a contaminated swamp. Midwest Ecology Symposium, Michigan State University, East Lansing, MI

    Stewart, C.A. 1981. A preliminary analysis of diet and resource partitioning in Etheostoma caeruleum Storer and Etheostoma flabellare Rafinesque in Rock Run, Clark County, OH. Presented at Ohio Academy of Science, Wooster, OH. Ohio J. Science 81 (April Program Abstracts): 17. http://hdl.handle.net/2022/15227

    Reash, R., and C.A. Stewart. 1981. Preliminary investigations of longitudinal distribution and fish species diversity in Rock Run, Clark County, Ohio. Beta Beta Beta Annual Meeting, Bios 52: 178 (abstract). http://hdl.handle.net/2022/15228

Awards

2016Phil Andrews Memorial Best Technical Paper Award, XSEDE16
2015Phil Andrews Memorial Best Technical Paper Award, XSEDE15
2007Bandwidth Challenge Award at Supercomputing 2007 conference (http://sc07.supercomputing.org/) for a project using a wide area file system to support several data-intensive research projects, including analysis of amyloid proteins implicated in Alzheimer’s disease.
2007IEEE Bioinformatics and Bioengineering Excellence in Service Award
2006Bandwidth Challenge honorable mention at Supercomputing 2006 conference (http://sc06.supercomputing.org/)
2003High Performance Computing Challenge Award, at Supercomputing 2003 conference (http://www.sc-conference.org/sc2003/) Stewart led an international team that created a global grid of supercomputers spanning every continent except Antarctica to perform maximum likelihood analysis of DNA data to analyze the phylogenetic relationships of arthropods.
1981Wittenberg University; Biology major of the year, Mathematics major final exam passed with distinction.