Although this software is no longer maintained by PTI, it is still available for use.
A list of open source software products produced and distributed by PTI and its affiliated organizations is given below:
GeneIndex
- Seeks words of various lengths specified by users.
- Developed by National Center for Genome Analysis Support (NCGAS)
Twister
- Supports faster execution of many data mining applications implemented as MapReduce programs
- Allows MapReduce to achieve higher performance, perform faster data transfers, and reduce the time it takes to process vast sets of data
- Developed by Digital Science Center
Klatsch
- Provides an easy-to-program, flexible interface for exploring and analyzing feeds of social media data
- Developed by Digital Science Center
High Performance Storage Systems (HPSS) connector for the Java framework
- Contribution to HPSS base distribution to enable access via Java applets
- Developed by Research Technologies
Fault Tolerant Hybrid Information Service (FTHPIS)
- A hybrid grid information service supporting both the scalability of large amounts of relatively slowly varying data and a high performance rapidly updated information service for dynamic regions
- Supports ExtendedUDDI and WS-Context
- Developed by Digital Science Center
fastDNAml
- Maximum likelihood inference of evolutionary trees
- Developed by National Center for Genome Analysis Support (NCGAS)
Life Sciences DataBase Parsers
- Software to input data into IBM DiscoveryLink
- Developed by National Center for Genome Analysis Support (NCGAS)
Pubsonline
- Open source bibliographic management
- Developed by Research Technologies
NetKarma
- Allows researchers to see the exact state of the network and store configuration of the experiment and its slice
- The provenance of the data will be stored and visualized through a data portal
- Developed by Data to Insight Center (D2i)
HPJava
- An environment for scientific and parallel programming using Java, based on an extended version of the Java language
- Developed by Digital Science Center
mpiJava
- An object-oriented Java interface to the standard Message Passing Interface for parallel programming (MPI)
- Implemented as a set of Java wrappers to various native MPI packages
- Developed by Digital Science Center
PENELOPE-MPI
- Parallel (supercomputer) software for studying radiation transport used in planning chemotherapy for brain cancer
- Developed by Research Technologies
PENELOP-MPI is open source but not distributed in the US without permission from the government.
Simple Message Broker Library (SMBL)
- Tool for message passing interface programming with distributed systems
- Developed by Research Technologies
NaradaBrokering
- A content distribution infrastructure, and enables the development of secure, failure-resilient Systems
- Developed by Digital Science Center
Carousel
- An environment supporting ubiquitous accessing to community grid systems from various small wireless devices such as smartphones
- Developed by Digital Science Center